All the figures and tables contained in this report are available with publication-ready quality in the output directory of the OROCHI user.
For each of the sections shown in this report, these are the data used:
*All read-based plots were made using MicrobiotaProcess. For more information, consult their documentation.
Average read counts per treatment plotted per taxonomic level
For all the samples, using a heatmap maybe be a better option to plot all this information in a more understandable way. Columns correspond to samples, rows correspond to t
Linkage files found: [1] “/home/nioo/luisa-mariaa/orochi_trial/2024_orochi/orochiNIOO/AllSimReads_out/results/07_maglinkage/A/markermag/A_linkages_plot_round1.html” [2] “/home/nioo/luisa-mariaa/orochi_trial/2024_orochi/orochiNIOO/AllSimReads_out/results/07_maglinkage/B/markermag/B_linkages_plot_round1.html” [1] TRUE TRUE ⚠️ No Round 1 linkage plot files found in /home/nioo/luisa-mariaa/orochi_trial/2024_orochi/orochiNIOO/AllSimReads_out/07_maglinkage ⚠️ No Round 2 linkage plot files found in /home/nioo/luisa-mariaa/orochi_trial/2024_orochi/orochiNIOO/AllSimReads_out/07_maglinkage